Automated Image Preprocessing and Oocyst Recognition Tool (AI.PORT)
Built by Duo Peng @ the Catteruccia Lab, thanks to Erney Marrogi.
This tool fully automates preprocessing of microscope images: focusing using z-stack and stitching, then it performs oocyst recognition using Convolutional Neural Network.
Instructions:
Drag and drop image files into the boxes below. Images dropped in the same box will be used for stack-focusing. Stack-focused images from different boxes will be used for stitching and subsequent oocyst recognition.